Stereology

Stereo Investigator Technical Questions This category is for questions about using Stereo Investigator. MBF experts and community members will be able to help answer your questions. Stereo Investigator Cleared Tissue Edition Stereo Investigator Cleared Tissue Edition is specifically designed for use with images of cleared tissue specimens. Post questions here about how to use the product and how it differs from Stereo Investigator.

Topic	Replies	Views	Activity
About the Stereology category Stereology	0	958	April 17, 2020
Optical Fractionator making me oversample? Stereology optical-fractionator , stereology , stereo-investigator	2	109	October 29, 2024
0 value in Estimated value using mean section thickness Stereology stereology , stereo-investigator	2	680	October 7, 2022
Question via Twitter from Erika Gyengesi Stereo Investigator Technical Questions	0	555	September 26, 2022
SI and NL 2022 Crashing when we try to acquire photo Stereo Investigator Technical Questions stereo-investigator , neurolucida	3	696	August 29, 2022
how to determine isotropy of sample Stereo Investigator Technical Questions	1	643	May 23, 2022
Nested contours Stereo Investigator Technical Questions	2	651	May 21, 2022
SI software crashing/freezing Stereology stereo-investigator , optical-fractionator , stereology	1	907	April 6, 2022
Disector /Physical Fractionator Stereology	1	637	March 17, 2022
Measuring Neuronal Density Stereology	1	664	March 11, 2022
Stereology on 2D MicroCT slices Stereology stereology	4	796	December 17, 2021
Exporting Tracing Data Coordinates Stereo Investigator Technical Questions	0	950	June 22, 2021
Cell distribution in my region of interest Stereology stereo-investigator , optical-fractionator	1	816	May 17, 2021
FAQ 6: Is it acceptable to change sampling parameters among groups or within groups? Stereology stereology	0	741	May 4, 2021
FAQ 7: Is it acceptable to change disector height among groups or within groups? I am unsure about whether or not to maintain the height of my disector across tissue specimens that vary in thickness? Stereology stereology	0	770	May 4, 2021
FAQ 8: How do I know how tall to make my disector? Stereology stereology	0	712	May 4, 2021
FAQ 9: Is it OK if my sections thicknesses do not come out exactly the same? Stereology stereology	0	733	May 4, 2021
FAQ 10: A counting frame falls on the edge of my region of interest, and the contour is “cutting off” part of the counting frame – is that okay? Stereology stereology	0	647	May 4, 2021
FAQ 11: Is it a problem if the number of counting frames changes from section to section? Stereology stereology	0	710	May 4, 2021
FAQ 12: Can I sample several different populations simultaneously? Stereology stereology	0	689	May 4, 2021
FAQ 13: If my cell population is very sparsely distributed, do I need to do anything differently? Stereology stereology	0	700	May 4, 2021
FAQ 14: Is there anything I can do to account for damage that occurs within the region of interest? Stereology stereology	0	832	May 4, 2021
FAQ 15: How can I convert results of my stereological probe to a density of cells/fibers/vessels? Stereology stereology	0	669	May 4, 2021
FAQ 1: How thick should I cut my tissue sections for the optical fractionator probe? Stereology stereology	0	724	May 4, 2021
FAQ 2: Is my tissue too thin? Stereology stereology	0	687	May 4, 2021
FAQ 3: How do I identify the ‘top of my tissue’? Stereology	0	678	May 4, 2021
FAQ 4: Can I use paraffin embedded tissue sections for stereology? Stereology stereology	0	643	May 4, 2021
FAQ 5: My tissue shrank too much even though I cut it very thick, can I still use it for my Optical Fractionator study? Stereology stereology	0	627	May 4, 2021
Section Thickness for Optical Fractionator and Immunohistochemistry Stereology optical-fractionator	6	1259	April 27, 2021
Q: Is it possible to perform counting at lower magnifications? Stereo Investigator Technical Questions stereo-investigator	0	722	March 25, 2021