Stereology

Stereo Investigator Technical Questions This category is for questions about using Stereo Investigator. MBF experts and community members will be able to help answer your questions. Stereo Investigator Cleared Tissue Edition Stereo Investigator Cleared Tissue Edition is specifically designed for use with images of cleared tissue specimens. Post questions here about how to use the product and how it differs from Stereo Investigator.

Topic	Replies	Views	Activity
About the Stereology category Stereology	0	944	April 17, 2020
0 value in Estimated value using mean section thickness Stereology stereology , stereo-investigator	2	589	October 7, 2022
Question via Twitter from Erika Gyengesi Stereo Investigator Technical Questions	0	508	September 26, 2022
SI and NL 2022 Crashing when we try to acquire photo Stereo Investigator Technical Questions stereo-investigator , neurolucida	3	643	August 29, 2022
how to determine isotropy of sample Stereo Investigator Technical Questions	1	542	May 23, 2022
Nested contours Stereo Investigator Technical Questions	2	549	May 21, 2022
SI software crashing/freezing Stereology stereo-investigator , optical-fractionator , stereology	1	792	April 6, 2022
Disector /Physical Fractionator Stereology	1	568	March 17, 2022
Measuring Neuronal Density Stereology	1	571	March 11, 2022
Stereology on 2D MicroCT slices Stereology stereology	4	712	December 17, 2021
Exporting Tracing Data Coordinates Stereo Investigator Technical Questions	0	895	June 22, 2021
Cell distribution in my region of interest Stereology stereo-investigator , optical-fractionator	1	759	May 17, 2021
FAQ 6: Is it acceptable to change sampling parameters among groups or within groups? Stereology stereology	0	688	May 4, 2021
FAQ 7: Is it acceptable to change disector height among groups or within groups? I am unsure about whether or not to maintain the height of my disector across tissue specimens that vary in thickness? Stereology stereology	0	741	May 4, 2021
FAQ 8: How do I know how tall to make my disector? Stereology stereology	0	681	May 4, 2021
FAQ 9: Is it OK if my sections thicknesses do not come out exactly the same? Stereology stereology	0	690	May 4, 2021
FAQ 10: A counting frame falls on the edge of my region of interest, and the contour is “cutting off” part of the counting frame – is that okay? Stereology stereology	0	605	May 4, 2021
FAQ 11: Is it a problem if the number of counting frames changes from section to section? Stereology stereology	0	663	May 4, 2021
FAQ 12: Can I sample several different populations simultaneously? Stereology stereology	0	661	May 4, 2021
FAQ 13: If my cell population is very sparsely distributed, do I need to do anything differently? Stereology stereology	0	667	May 4, 2021
FAQ 14: Is there anything I can do to account for damage that occurs within the region of interest? Stereology stereology	0	789	May 4, 2021
FAQ 15: How can I convert results of my stereological probe to a density of cells/fibers/vessels? Stereology stereology	0	650	May 4, 2021
FAQ 1: How thick should I cut my tissue sections for the optical fractionator probe? Stereology stereology	0	667	May 4, 2021
FAQ 2: Is my tissue too thin? Stereology stereology	0	648	May 4, 2021
FAQ 3: How do I identify the ‘top of my tissue’? Stereology	0	649	May 4, 2021
FAQ 4: Can I use paraffin embedded tissue sections for stereology? Stereology stereology	0	612	May 4, 2021
FAQ 5: My tissue shrank too much even though I cut it very thick, can I still use it for my Optical Fractionator study? Stereology stereology	0	614	May 4, 2021
Section Thickness for Optical Fractionator and Immunohistochemistry Stereology optical-fractionator	6	1002	April 27, 2021
Q: Is it possible to perform counting at lower magnifications? Stereo Investigator Technical Questions stereo-investigator	0	702	March 25, 2021
Q: If I'm counting and I want to start over, how do I delete the contours and markers? Stereo Investigator Technical Questions stereo-investigator	0	1024	March 25, 2021